Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_87.95

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_87.95
Family
WRKY
3D structure (top 5)
1WJ2 2AYD
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

329411 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g14440.1 Score: 1

Populus trichocarpa

732261 Score: 1

Sorghum bicolor

4992581 Score: 1

Vitis vinifera

GSVIVP00006872001 Score: 1

Zea mays

GRMZM2G066403_P01 Score: 1

Expression data

Expressed Sequence Tags

At.18265
Arabidopsis thaliana WRKY9 (WRKY DNA-binding protein 9); transcription factor (WRKY9) mRNA, complete cds /cds=p(2,1126) /gb=NM_105485
At.25260
Arabidopsis thaliana At1g62300 mRNA sequence /gb=AY056172
Mtr.13332
Medicago truncatula WRKY transcription factor WRKY100630 mRNA, complete cds /cds=p(112,1773) /gb=EU526034
Os.39939
Oryza sativa (japonica cultivar-group) Os01g0289600 (Os01g0289600) mRNA, complete cds /cds=p(1,1836) /gb=NM_001049319
Os.89575
18034rsicee_8920.y1 Oryza sativa cv. LYP9 tillering whole plant cDNA library Oryza sativa (indica cultivar-group) cDNA 5', mRNA sequence /clone_end=5' /gb=CF986476
Pba.6089
WS02546.C21.1_A23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_A23 3', mRNA sequence /clone=WS02546_A23 /clone_end=3' /gb=DT490823
Ppa.14418
CBAX1350.fwd CBAX Physcomitrella patens subsp. patens Gransden - dessicated (L) Physcomitrella patens subsp. patens cDNA clone CBAX1350 5', mRNA sequence /clone=CBAX1350 /clone_end=5' /gb=FC440620
Pth.15491
WS01212.B21_A05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01212_A05 3', mRNA sequence /clone=WS01212_A05 /clone_end=3' /gb=CV233689
Pth.15673
Populus trichocarpa clone WS0124_D24 unknown mRNA /cds=p(106,738) /gb=EF147673
Pth.6089
WS02546.C21.1_A23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02546_A23 3', mRNA sequence /clone=WS02546_A23 /clone_end=3' /gb=DT490823
Vvi.13273
VVI124B01_602338 CabSau Flower Stage 12 (FLOu0012) Vitis vinifera cDNA clone VVI124B01 5, mRNA sequence /clone=VVI124B01 /clone_end=5' /gb=DT024605
Vvi.17716
WIN0563.C21_I08 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0563_I08 3', mRNA sequence /clone=WIN0563_I08 /clone_end=3' /gb=EC955031

Domain Architecture

WRKY PF03106 evm.TU.supercontig_87.95
DomainStartEndBit scoreE-value
WRKY350410144.72.9e-40

Sequences