Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_898.5

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_898.5
Family
C3H
3D structure (top 5)
2JJQ 1UWV 3BT7 2YXD 3C0K
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

868960 Score: 1

Arabidopsis thaliana

AT2G28450.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g01480.1 Score: 1

Physcomitrella patens

138354 Score: 1

Populus trichocarpa

833322 Score: 1

Sorghum bicolor

5056910 Score: 1

Vitis vinifera

GSVIVP00024526001 Score: 1

Zea mays

GRMZM2G147623_P02 Score: 1

Expression data

Expressed Sequence Tags

At.44990
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G28450) mRNA, complete cds /cds=p(134,2563) /gb=NM_128405
Os.50217
Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence /gb=AK120156
Pba.9550
WS02530.BR_G11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_G11 5', mRNA sequence /clone=WS02530_G11 /clone_end=5' /gb=DT480938
Pth.15744
WS02530.BR_G11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_G11 5', mRNA sequence /clone=WS02530_G11 /clone_end=5' /gb=DT480938
Sbi.18550
EM1_14_F06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence /gb=BG322827

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_898.5
DomainStartEndBit scoreE-value
zf-CCCH719836.98.2e-08

Sequences