Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_9.180

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_9.180
Family
C3H
3D structure (top 5)
1M9O 2CQE 2RHK 2RPP 2D9N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

904260 Score: 1

Arabidopsis thaliana

AT2G47850.1 Score: 1
AT2G47850.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os11g28270.1 Score: 1
LOC_Os11g28270.2 Score: 0.955

Populus trichocarpa

229700 Score: 1

Sorghum bicolor

4797888 Score: 1

Vitis vinifera

GSVIVP00023577001 Score: 1

Zea mays

GRMZM2G036837_P01 Score: 1
GRMZM2G036837_P02 Score: 1
GRMZM2G036837_P03 Score: 1
GRMZM2G100794_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21006
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G47850) mRNA, complete cds /cds=p(281,1687) /gb=NM_130352
At.22535
Arabidopsis thaliana nucleic acid binding (AT5G18550) mRNA, complete cds /cds=p(338,1735) /gb=NM_121860
At.27771
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-11-O09 /cds=p(267,1655) /gb=AK230312
Mtr.10686
EST647280 HOGA Medicago truncatula cDNA clone HOGA-31I22, mRNA sequence /clone=HOGA-31I22 /gb=CB894488
Os.9029
Oryza sativa Japonica Group cDNA clone:J033073E09, full insert sequence /cds=p(298,1698) /gb=AK073920
Os.9931
Oryza sativa Japonica Group cDNA clone:J013116H24, full insert sequence /cds=p(333,1727) /gb=AK111633

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_9.180
DomainStartEndBit scoreE-value
zf-CCCH497543.86.9e-10
zf-CCCH9412046.11.3e-10
zf-CCCH14016643.86.9e-10
zf-CCCH29732345.22.5e-10

Sequences