Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_90.53

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_90.53
Family
C3H
3D structure (top 5)
1M9O 2E5S 3D2N 2RPP 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

890808 Score: 1

Arabidopsis thaliana

AT1G32360.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g06330.1 Score: 1

Populus trichocarpa

554027 Score: 1

Sorghum bicolor

5007510 Score: 1

Selaginella moellendorffii

413367 Score: 1

Vitis vinifera

GSVIVP00015742001 Score: 1

Zea mays

GRMZM2G030795_P01 Score: 1
GRMZM2G030795_P03 Score: 1
GRMZM2G030795_P02 Score: 0.963
GRMZM2G030795_P04 Score: 0.963

Expression data

Expressed Sequence Tags

At.15521
Arabidopsis thaliana At1g32359/F27G20.10 mRNA, complete cds /cds=p(352,1506) /gb=AY056407
At.74086
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT1G32360) mRNA, complete cds /cds=p(395,1549) /gb=NM_102969
Os.48416
Oryza sativa (japonica cultivar-group) Os08g0159800 (Os08g0159800) mRNA, complete cds /cds=p(1,1104) /gb=NM_001067579
Sbi.11578
WS1_98_B06.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence /gb=BE593461

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_90.53
DomainStartEndBit scoreE-value
zf-CCCH9812337.17e-08
zf-CCCH17920528.42.8e-05
zf-CCCH28030647.55.1e-11

Sequences