Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_92.92

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_92.92
Family
C2H2
3D structure (top 5)
2EE8 2CSH 2DLQ 1TF6 2I13
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

908222 Score: 1

Arabidopsis thaliana

AT5G03510.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os04g08060.1 Score: 1

Populus trichocarpa

576790 Score: 1

Vitis vinifera

GSVIVP00000604001 Score: 1

Zea mays

GRMZM2G089721_P01 Score: 1

Expression data

Expressed Sequence Tags

Pba.10191
WS01917.C21_P03 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01917_P03 3', mRNA sequence /clone=WS01917_P03 /clone_end=3' /gb=DT469489
Pba.2295
WS01228.B21_G16 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_G16 3', mRNA sequence /clone=WS01228_G16 /clone_end=3' /gb=DT476127
Pth.10191
WS01917.C21_P03 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01917_P03 3', mRNA sequence /clone=WS01917_P03 /clone_end=3' /gb=DT469489
Ptp.12454
R025G08.5pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone V060G08 5', mRNA sequence /clone=V060G08 /clone_end=5' /gb=DN497685
Vvi.12262
WIN1028.C21_E15 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA clone WIN1028_E15 3', mRNA sequence /clone=WIN1028_E15 /clone_end=3' /gb=EC975476

Domain Architecture

zf-C2H2 PF00096 evm.TU.supercontig_92.92
DomainStartEndBit scoreE-value
zf-C2H211814019.40.015
zf-C2H2186208220.0025

Sequences