version: 3.0
CCAAT-Dr1 HMM
The CCAAT-Dr1 domain is characteristic of the CCAAT-Dr1 transcription factor family. There are two sequences belonging to this family in Arabidopsis thaliana, a multiple alignment of the full length of both proteins was used to build an hmm, to find more members of this family
CLUSTAL W (1.8) multiple sequence alignment At5g08190 MDPMDIVGKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLISSESNE At5g23090 MDPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESND ******************************.**********************:*****: At5g08190 VCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETMQDSQRSVKMNSGAEMTE At5g23090 VCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPGAQMTE ***************************:*****************:***** *.**:*** At5g08190 EEAAAEQQRMFAEARARMNGGVTVPQPEQLEEPQQQQQTSLQS At5g23090 EEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQRSPQS---- **********************:*****: * *:. *: