version: 3.0
NOZZLE_Angio HMM
Sequence NP_194463 from Arabidopsis thaliana was used as seed in a PSI-BLAST search with 4 iterations. The retrieved sequences, from Arabidopsis thaliana, Vitis vinifera, Brassica juncea and Medicago truncatula, were aligned and used to build a HMM.
CLUSTAL W (1.83) multiple sequence alignment gb_AAD37775.1 QKKPTLRGMGVAKLERQRIEEEKKQL-AAATVGDTSSVASISNN-----ATRLPVP---- gb_ABC87311.1 QKEPTLRGMGVAKLERFIAEEEKKKMVVVAGEGDTS--AASPNT-----ATRFP------ emb_CAN74467.1 QKKQPQRGMGVAQLERLRVEEWKKMT-GITHLQPMSLPGHFRYQIPYQFAEPPPAPASGQ gb_ABD32238.1 PKK-PLRGVGVEQLEKQRIAALMKKHFDLPHQQQVLKYGAFSPTGPFQFPQQQMMMNENT gb_AAD37775.1 VDPG----VVLQGFPS--------SLGS---NRIYCGGVGSGQ---------------VM gb_ABC87311.1 -DRG----VVLQGFPSYGGGPTNTSLGGYTRSRFLCGGAGSGQ---------------IM emb_CAN74467.1 VQPG----LGSPGWVP--------RFGG---GGFHGFSGGGGF---------------RV gb_ABD32238.1 TNNNNNTVLVGSGYVP-----------------FVGSNVGAGWIVPNNQNQNQNNIKNRV gb_AAD37775.1 IDPVISPWGFVETS------STTHELSSISNPQMFNASSNNRCDTCFKKKRLDGDQNNVV gb_ABC87311.1 IDPVCSPWGFVETS------A--HELSSIPNPQMYNASSNH-CDTCFKKKRLDGDQ-NVV emb_CAN74467.1 VDPYRNDGAVGTLT------EASRELSSM--PKM--DCVFDRCDVCFKKKRMNADN---- gb_ABD32238.1 VVGGGNYGSGSLLCSSRNPFEPSKELSSM--PNLHHSQPF---DLCLKKTRLNEEESNVM gb_AAD37775.1 RSNGGGFSKYTMI--PPPMNG--YDQYLLQSDHHQRSQGFLYDHRIARA-ASVSASSTTI gb_ABC87311.1 RSNGGGFSKYTMMIPPPPMNG--YDE-LLPPD--QRSQGFFYDQRIARS-A--PAASASF emb_CAN74467.1 LGXXXGREKYAET---PPINS-XBFLGLDMANDENR------DLSRRRSPM--TATYACY gb_ABD32238.1 RGAG--------------INT----RNLEAWSNHHYVHDFL-GGYMPQP-Q--PSAYPTH gb_AAD37775.1 NP--YFNEAT-----NHTG-PMEEFGSYMEGNPRNGSGGVKEYEFFPGKYGERVSV---- gb_ABC87311.1 NP--YFNEAT-----NLTGYSREEFGSV---NPRNGTRGVKEYEFFPGKYDDFHGK---- emb_CAN74467.1 NH----SEDA-----EVVAVHRKGNS--------VNGRIFMEYEFFPGKGEASTSVVGGG gb_ABD32238.1 HN---LDEYV-----EVVAVHRRGSS-----SSGGKDKVFMEYDFFHEKDGRDTSFKNLK gb_AAD37775.1 -------------VATTSSLVGDCSP-N---TIDLSLKL gb_ABC87311.1 -------------SFPVATSVGDCSP-NTSSTIDLSLKL emb_CAN74467.1 --GGGGEAS---LAIPTAEAATTTSSRNASNVVDLSLKL gb_ABD32238.1 FPTIGEASSSSSLSLTVSAYGGDNAT-TDLSSIDLSLKL