version: 3.0
VARL HMM
Alignments obtained from Duncan, L. et al. (2007): The VARL gene family and the evolutionary origins of the master cell-type regulatory gene, regA, in Volvox carteri
CLUSTAL W (1.83) multiple sequence alignment RLS4/13-87 VVGVFHPQLYMKGGDCIEV----NGKMISRGRFEKLAGTATAKWHVSIKVLPSG---TTI RLS7/13-87 VVGVFYPEIYIKGGDCIEL----NGKMISRGRFEKLAGSATAKWHVSIKVLPSG---TTI RlsJ/13-87 AVGLFHPQLYLSGGNCIEC----GNEMMSRGKFERLAGTATAKWHVSIKVLPSG---VTL RlsK/13-87 AVGLFHPQLYLSGGNCIEC----GNEMMSRGKFERLAGTATAKWHVSIKVLPSG---VTL RLS3/13-87 VYGTFHPGPYLRNKECIEH----DGRMITRGHFERLGGTATAKWHVSIKVMPQN---LAL RLS5/13-87 VVGVFHVLPYLEGGKCIEY----DGELISRSAFERVGGSTMAKWYRSIKVLPDG---MSL RLS9/1-75 VVGVFHMKPYMEGGKCIEY----DGELISRSAFERVGGSTMAKWYRSIKVLPEG---VSL RLS6/13-87 VLGVFYTGAYLDGGRCVEH----CGELLSRSAFERVGGSSMAKWYRSIKVLPDG---MSL RlsH/13-87 VQGIFHVKPYLEGRKCIDH----GGEMVSRSAFERAGGSMMAKWYRSIKVLPEG---VSL RLS10/1-61 --------------DCIWW----NNQFVSRSRFEKEGGSTTAKWHCSIKVAGDN---TAL RlsL/13-88 IQGVFHPERYLANQDCIFY----ENKFISRSAFEKAGGSTTAKWHCSIKVAGTHA--VTL RLS1/13-87 AVGLFQPQLYLARMDCIRY----KGINVSRSNFEKVGGSNMAKWYRSIRVMPDL---EPL RlsD/13-87 ACGVFEPALYMSRMDCIRY----HGQLISRSHFEKIGGSNMAKWYRSIRVLPDL---EPL RlsA/13-87 ACGVFDLTRYLTGRDCVRH----CGRWISRSQFEKVGGSTMAKWYRSIRVLPDL---EPL RlsC/13-87 VRGRFDVPRYLAGRDCIFH----NGRWMSRSNFERVGGSKMAKWYRSIRVLPDL---EPL RegA/13-87 ACGVFDVPRYLAGRDCIHN----GSKWMSRSQFEKVGGSKMAKWYRSIRVLPDL---EPL RlsB/13-87 PVGKFDVPRYIAGRDCIFF----NGRWMSRSHFEKVGGSRMAKWYRSIRVLPDL---EPL RlsF/13-90 VRGTFHPDLYMCSQDCITF----KGKRIGRSKFEKLGNSSMAKWHRSIRVIREDGELEPL RLS8/13-87 VVGLFHPDRYLKGGDCIAC----GMGMVSRSRFEKIGGSPMAKWYRSIRVVGSD---EPL RlsE/13-87 VFGMFYPDRYMVGVDCILV----DGMFVSRSRFEKLGGSLMAKWYRSIRVVDTA---EPL RlsG/1-75 IYGIFHPDRYLSGEDCIDY----QGNFITRSKFEKLGGSLMAKWYRSIRVVTTD---EPL RLS11/1-75 VFGVFHFDRYLDNRDCIEH----QGSFLSRSKFEKLGGSVMAKWYRSIRVADTG---EAL RLS2/13-90 VLGLFHPRRYVEGRDCVEYPPHS-GTFVSRSHFEKVGGAVTAKWYRSIRVLPQM---EHL RlsI/13-90 VLGVFHPQRYLDMTECIECPPES-GTFITRSHFEKVGGAATAKWYRSIRVLPSL---EHL RlsM/13-91 VVGLFDPVRYLLRRDCIFLLNCSPNTWVSRSHFERICGCGTAKWYRSIRVLGPM---ETL RLS12/13-87 AEGYFDPQAYMRREPCVLH----DGEMLLPTKFEKLARSK-QRWTIGVKVLETC---KPI RLS4/13-87 GKWLQQHGLPV-LQGRPRKRRAA RLS7/13-87 GKWLQQQGLPV-LQGQPRAKRST RlsJ/13-87 GKWLQQHGLPI-LQGRPRRRRAD RlsK/13-87 GKWLQQHGLPI-LQGRPRKRPPL RLS3/13-87 GKWLASHGLPV-LTGKPRKPRSN RLS5/13-87 GRWLAAHKLPI-LKGNPRRSFKG RLS9/1-75 GRWLTSRGLPI-IKGNPRRNQKG RLS6/13-87 GRWLLARGMPV-LKGNPRQSRRR RlsH/13-87 GKWLVSNGLPV-LKGNPRRSKKS RLS10/1-61 GSWLSARGLPV-LKGCARKSKKQ RlsL/13-88 GSWLNAKGLPV-IKGGSRKSKRQ RLS1/13-87 GEWLERHGLPV-LKGAARRSRPR RlsD/13-87 GEWLERHGMPV-TKGPARRYRPR RlsA/13-87 GEWLERHGMPV-LRGPARRRRRR RlsC/13-87 GEWLERHGMPV-TKGPARRSSKR RegA/13-87 GEWLERHGMPV-TKGPARRSRKR RlsB/13-87 GEWLERNGMPI-TKGPSRRSSRR RlsF/13-90 GEWLTRHGLPV-LKGKQRISRKR RLS8/13-87 GSWLTRHGLPV-HTGMGRGRGRK RlsE/13-87 GAWLERHNLPV-FTGKARQRRQR RlsG/1-75 GTWLTRRGLPV-LKGTSRNRKQV RLS11/1-75 GNWLERHGLPV-LRGKPRTRVPK RLS2/13-90 GDWLEAHGLQV-FKGTGRKRGGR RlsI/13-90 GSWLARLSLPV-FKGVGRRRHQR RlsM/13-91 GEWLTRVGLPL-WMGPSRTGPNQ RLS12/13-87 GDWLQEHGLPLTLRGLRRRPVPG