version: 3.0
trihelix HMM
The trihelix domain is characteristic of the trihelix family. The trihelix domain was extracted from known members of this family in Nicotiana tabacum, Arabidopsis thaliana and Oryza sativa. The multiple alignment obtained was used as seed for a hmm.
CLUSTAL X (1.82) multiple sequence alignment AtGT-2N-AAM64675 ----WPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMM-ELGYK------------ AtGTL1C-AAM98226 ----WPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLL-ELGYK------------ OsGT-2N-BAD25570 ----WPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLA-ELGYQ------------ N37430-NP_568506 ----WCSDEVLALLRFRSTVENWFP-----EFTWEHTSRKLA-EVGFK------------ AtGT-2C-AAM64675 ----WPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMR-RLGYN------------ OsGT-2C-BAD25570 ----WPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQ-RIGYN------------ AtGTL1N-AAM98226 ----WPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMK-RMGYN------------ AB023041-NP_189228 ----WAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMR-EKGFD------------ AtGT-1-AAA66473 ----WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMR-EKGFD------------ NtGT-1a-_PQ0446 ----WVQEETRALISLRRELDSLFNTSKSNKHLWDQISLKMR-EKGFD------------ ac003028 ----WSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMR-DKSFP------------ AB007649-AAO42228 ----WKPEEIKKVIRMRGELHSRFQVVKGRMALWEEISSNLS-AEGIN------------ F11B9.6/1-447 REDWWSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNSSHG-NGR---------P F9F8.9/1-447 REDWWSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNSSHG-NGR---------P MOP10_9/1-447 REDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSR---------K F14P22.220/1-447 REDCWSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTGRNVSAAKSQPY NtSIP1/1-447 REDCWSEAATHTLVEAWGSHYLELKRGNLRQKYWQEVANAVNALHGHT-------KKQ-Y * :: *. : : AtGT-2N-AAM64675 RSSKKCKEKFENVYKYHKRTK AtGTL1C-AAM98226 RSSKKCKEKFENVQKYYKRTK OsGT-2N-BAD25570 RSGKKCKEKFENVDKYYKRTK N37430-NP_568506 RSPQECKEKFEEERRYFNSNN AtGT-2C-AAM64675 RSAKRCKEKWENINKYFKKVK OsGT-2C-BAD25570 RSAKRCKEKWENINKYFKKVK AtGTL1N-AAM98226 RNAKRCKEKWENINKYYKKVK AB023041-NP_189228 RSPSMCTDKWRNILKEFKKAK AtGT-1-AAA66473 RSPTMCTDKWRNLLKEFKKAK NtGT-1a-_PQ0446 RSPTMCTDKWRNLLKEFKKAK ac003028 RSPEQCKCKWKNLVTRFKGCE AB007649-AAO42228 RSPGQCKSLWASLIQKYEESK F11B9.6/1-447 KTDVQCKNRIDTLKKKYKTEK F9F8.9/1-447 KTDVQCKNRIDTLKKKYKTEK MOP10_9/1-447 KTDLQCKNRVDTLKKKYKTEK F14P22.220/1-447 RTDVQCKNRIDTLKKKYKVEK NtSIP1/1-447 RTDIQCKNRIDTLKKKYKIEK :. *. .: :